Bioinformatics Resources

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Description

Tool/Resource

Similarity search

BLAST

Similarity search

FASTA

Similarity search

BLAT

   

Nucleotide sequence database

GenBank

Nucleotide sequence database

ENA

Nucleotide sequence database

DDBJ

   

Multiple sequence alignment

ClustalX

Multiple sequence alignment

ClustalW

Multiple sequence alignment

Muscle

Multiple sequence alignment

MEGA

Multiple sequence alignment

Jalview

Multiple sequence alignment

Expasy Server Tools

Multiple sequence alignment

TCoffee

   

Phylogenetics

ClustalX

Phylogenetics

ClustalW

Phylogenetics

Muscle

Phylogenetics

MEGA

Phylogenetics

Jalview

Phylogenetics

TCoffee

Phylogenetics

Mr. Bayes

Phylogenetics

Phylip

Phylogenetics

Expasy Tools

Phylogenetics

PhyMl

   

Protein sequence database

Protein Information Resource (PIR)

Protein sequence database

Uniprot KB

Protein sequence database

Interpro

Protein sequence database

Pfam

Protein sequence database

Prosite

Protein sequence database

PRINTS

   

Protein structure database

SCOP

Protein structure database

CATH

Protein structure database

RCSB Protein Data Bank (PDB)

Protein structure database

Modbase

   

Protein interactions

SMART

Protein interactions

STRING

   

Protein modelling

SWISS-MODEL

   

Proteomics

Expasy Server Tools

Protein Structure Visualization Tools

UCSF Chimera

Protein Structure Visualization Tools

Rasmol

Protein Structure Visualization Tools

Jmol

Protein Structure Visualization Tools

Pymol

Protein Structure Visualization Tools

VMD

Protein Structure Visualization Tools

Cn3D

   

Perl Programming

Active State Perl Interpreter

Coding

Notepad++

   

Drug discovery and design

Open Babel

Drug discovery and design

UCSF Chimera

Drug discovery and design

AutoDock Tools

Drug discovery and design

MGL Tools

Drug discovery and design

AutoDock Vina

Drug discovery and design

PyRx

Drug discovery and design

Raccoon

Drug discovery and design

Fox

Drug discovery and design

RCSB PDB

Drug discovery and design

ZINC Database

Drug discovery and design

PubChem

   

Database design

WAMP Server

Database design

XXAMP Server

   

Linux OS

JVM Server

Linux OS

Biolinux

   

Microarray data analysis

R

Microarray data analysis

Bioconductor

Microarray data analysis

Gene Expression Omnibus (GEO)

Microarray data analysis

Array Express

   

WTSS/RNA Seq data analysis

SRA

WTSS/RNA Seq data analysis

R

WTSS/RNA Seq data analysis

Bioconductor

WTSS/RNA Seq data analysis

Gene Expression Omnibus (GEO)

WTSS/RNA Seq data analysis

Array Express

   

Network/Pathway tools

KEGG

Network/Pathway tools

Cytoscape

   

Genomic databases

Gene Cards

Genomic databases

FlyBase

Genomic databases

Proteome

Genomic databases

Saccharomyces Genome Database

Genomic databases

Wormbase

Genomic databases

FlyBase

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CONTACTS

P. O. Box 30197 - 00100 G.P.O
College of Biological and Physical Sciences,

Chiromo Campus, University of Nairobi
Tel: +254-20-4449004/5
Email: cebib@uonbi.ac.ke

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